EuBIC-MS Seminar on Computational Mass Spectrometry 2024, Barcelona

Our yearly Organizational Meeting of the European Bioinformatics Community for Mass Spectrometry (EuBIC-MS) has enthusiastic member across Europe and invites active members to meet once again in Barcelona. Besides our yearly organizational meet up, where we discus our strategic next steps and upcoming conferences, we also organize a small seminar, providing a perfect opportunity to showcase the research of attending EuBIC-MS Members to researches in and the Charles Darwin Room at the ground floor of the PRBB building.

Program

09:30Reprocessing public data for machine learning based discovery of tissue-specific protein and PTM patterns
Tine Claeys, VIB – UGent Center for Medical Biotechnology, Belgium
09:45MS²DIP: Embracing post-translational modifications for spectrum intensity prediction with graph neural networks
Ralf Gabriels, CompOmics; VIB-UGent Center for Biotechnology, Belgium
10:00Sequence-to-sequence translation from mass spectra to peptides with a transformer model
Wout Bittremieux, University of Antwerp, Belgium
10:15Open modification peptide identification with MS Andrea
Louise Marie Buur, University of Applied Sciences Upper Austria, Austria
10:30Is comparing of search engines and post-processing in 2024 still a thing?
Julian Uskoreit, Ruhr University Bochum, Medical Bioinformatics, Germany
10:45A NOT QUITE SANE APROACH TO SPECTRUM IDENTIFICATION
Dirk Winkelhardt, Ruhr University Bochum, Medical Bioinformatics, Germany
11:00Coffee Break (sponsored by PROTrEIN)
12:00Functional analysis of MS-based proteomics data: from protein groups to networks
Marie Locard-Paulet, CNRS – IPBS, France
12:15Quantify the Unknown: MS1 Quantification of features and mapping this information to Variants and alike results on MS2-Specra
Dominik Lux, Ruhr-University Bochum, Medical Proteome Center, Germany
12:30An end-to-end (phospho)proteomics data analysis platform for precision oncology of 1000 prospective pan-cancer patients
Mathew The, TU Munich, Germany
12:45QCloud and QSample: Nextflow-Powered Quality Control in Proteomics and Sample Management
Roger Olivella, CRG, Spain
13:00Proteobench: Open platform for community-curated benchmarks for computational proteomics
Bart Van Puyvelde, Laboratory of Pharmaceutical Biotechnology, Ghent University, Belgium
13:15Theoretical assessment of indistinguishable peptides in mass spectrometry-based proteomics
Zahra Elhamraoui, CRG, Spain

Registration

The seminar will start on Thursday, 26.09.2024, 9:30 AM
Registration is free for this seminar, although mandatory. Please register until 15.09.2024!
https://forms.gle/uU9bVVhjGN6eTtkU6

Sponsoring

PROTrEIN